PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG516800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 403aa    MW: 40169.6 Da    PI: 5.4072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG516800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12206251555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pavir.1KG516800.1.p 206 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 251
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.42E-13199255No hitNo description
SuperFamilySSF474594.71E-17199260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16203260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9206251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MQPSGREMQG VGGGGQDDFF DQMLSTLPAA WSELGSGKSP WELPAAGASE DAAFDESALL  60
ASRLRHHQIG GGGVDKPVML HLSDLHGLAA GGEDGGAAGF LPLPLFTDRG REDMDAAFKS  120
PNAAGGDQAL YNGFGAAGMH GAAAVQPQFG QGGSVPAQSF GGGAAAGGGG SAPAGAPAAG  180
ASPGGGAAPP RQQRLRARRG QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML  240
DEIIDYVKFL QLQVKVLSMS RLGGAAGVGP LVANMSSEGN GNGNGMSDSG DGNGANGGGN  300
GENGGGSLKV TEQQVARLME EDMGTAMQYL QGKGLCLMPI SLASAISSAT SSSLLSRPSI  360
GSMGSARGPA HEGGNPASPP LMNGAGGDDS RTVKDAGAGS KQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.297050.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151181.10.0uncharacterized protein LOC100284814
SwissprotQ9LSQ32e-75BH082_ARATH; Transcription factor bHLH82
TrEMBLB6TXR40.0B6TXR4_MAIZE; BHLH transcription factor
STRINGSb04g035890.11e-172(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-34LJRHL1-like 1